Sorry I missed your post earlier!
The only fish that really get affected are kokanee and grass carp. When sampling for these fish we have to be EXTREMELY careful as far as the amount of power we put out.
The larger the fish the more they are affected. I have seen 4 ft. sturgeon shoot out in front of the boat and the little ones just scoot off.
The idea is, once you hit a pool of fish you back off the power (electricity generated) and just start scooping fish as fast as you can. We sample all fish so that makes it easier for the people netting.
If a lake is medium to small in size (say, like Kress Lake, Klinepond Pond) the whole shoreline can be done in one night. If the lake is larger (Mineral, Lacamas, Sacajwea) then we do random sections and will do one or two nights.
For my surveys we don't use CO2 or any anestisizing, which makes it MUCH more difficult to handle the fish. Especially the larger ones. Some bios are now saying that CO2 is not good for the fish and we can't use clove oil or MS 222, so I am not sure what direction they are going to go in if any.
It'd be nice to be able to use something for the stomach sampling part. Fish get stressed when you stick the nozzle down their throat and there is a lot of loss due to inexperience of using this method.
Generally there aren't many fish lost. If one touches one of the rays, it may get a black mark across it's back.
stace